SGVYKVAYDWQH: A Specific Mimotope or A Target-Unrelated Peptide?

Abstract

The peptide SGVYKVAYDWQH challenges the traditional understanding of mimotopes, generally characterized by specific binding to a defined target. In contrast, this peptide exhibits a broad interaction profile, binding to various biological and non-biological targets, including proteins, small molecules, and cellular entities. This review systematically evaluates SGVYKVAYDWQH binding affinities across 22 peer-reviewed studies and 16 patents, revealing high-affinity interactions with proteins and moderate binding to non-biological targets and cells. Utilizing data from the Biopanning Data Bank and relevant bioinformatics tools (TUPDB, MimoSearch, TUPScan, and PSBinder), we analyzed the peptide's diverse interactions. Our study identified 26 distinct targets, including receptors, antigens, and small molecules, with significant binding observed to protein targets (e.g., CD133, HER2), cellular targets (e.g., blood-brain barrier, breast cancer cells), and even non-biological substances (e.g., printer toner, parabens). Despite its frequent selection across different targets, PSBinder predictions suggest a 91% likelihood that SGVYKVAYDWQH is a polystyrene surface-binding peptide. This implies that SGVYKVAYDWQH may function as a target-unrelated peptide rather than a specific mimotope. This review and comprehensive analysis reveal the peptide's promiscuous binding behavior, offering new insights into its classification and potential applications.

Received: 24 November 2024 | Revised: 13 February 2025 | Accepted: 7 April 2025

Conflicts of Interest

Jian Huang is the Associate Editor for Medinformatics and was not involved in the editorial review or the decision to publish this article. The authors declare that they have no conflicts of interest to this work.

Data Availability Statement

The data that support the findings of this study are openly available in Biopanning Data Bank at https://i.uestc.edu.cn/bdb/, reference number [12], and Google Patents at https://patents.google.com/?q=(SGVYKVAYDWQH)&oq=SGVYKVAYDWQH.

Author Contribution Statement

Hamza B. Abagna: Conceptualization, Methodology, Validation, Formal analysis, Investigation, Resources, Data curation, Writing – original draft, Writing – review & editing. Samarappuli Mudiyanselage Savini Gunarathne: Formal analysis, Investigation, Data curation. Yuqing Jiang: Formal analysis, Investigation, Data curation. Jian Huang: Conceptualization, Methodology, Validation, Resources, Writing – review & editing, Supervision, Project administration, Funding acquisition.